Parameters Report (Bladder Cancer project)

Description: This project aims at understanding the molecular mechanisms of cancer aggressiveness and the development of novel biomarkers for its oncological management.

Author: Eugenia, Date: 2008-05-12

Experiment: 2D electrophoresis

Proteomic Step: data_generation
Parameter Name	Parameter Value
instrument	PDQuest Picker
software	PDQuest

Proteomic Step: differential_expression
Parameter Name	Parameter Value
quantification_method	2-fold
statistical_test	Mann-Whitney

Proteomic Step: identification
Parameter Name	Parameter Value
instrument	MALDI-TOF
search_engine	Mascot
database_search	Swiss-Prot
taxonomy_search	Homo sapiens
peptide_tolerance	(+-)1.2Da

Experiment: LC-MS

Proteomic Step: data_generation
Parameter Name	Parameter Value
method	2D-LC

Proteomic Step: differential_expression
Parameter Name	Parameter Value
quantification_method	8-plex iTRAQ

Proteomic Step: ms_dentification
Parameter Name	Parameter Value
method	MS/MS
instrument	QqTOF
software	ProteinPilot
database	NCBI
taxonomy_search	Homo sapiens